Read e-book online A Practical Guide to Using Glycomics Databases PDF

By Kiyoko F. Aoki-Kinoshita

ISBN-10: 4431564527

ISBN-13: 9784431564522

ISBN-10: 4431564543

ISBN-13: 9784431564546

This ebook offers glycoscientists with a instruction manual of precious databases that may be utilized to glycoscience examine. even supposing many databases at the moment are publicly on hand, one of many hurdles for his or her clients is the training curve required to successfully make the most of these databases. as a result, this booklet not just describes the present databases, but additionally offers how one can receive the objective information. that's, simply because many databases offer quite a few facts that may be bought from varied views, every one bankruptcy presents clients with capability organic questions that may be spoke back by means of a specific database and step by step directions, with figures, on how one can receive that info. Troubleshooting guidance also are supplied to assist clients encountering difficulties that may be anticipated while utilizing those databases. furthermore, touch info for every database is equipped in case unforeseen concerns arise.

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Characterization of the processing intermediates in the synthesis of the complex oligosaccharide units of the vesicular stomatitis virus G protein. J Biol Chem 253:7771–7778 Kuttel M, Gain J, Burger A, Eborn E (2006) Techniques for visualization of carbohydrate molecules. J Mol Graph Modell 25:380–388 Kuttel M, Mao Y, Widmalm G, Lundborg M (2011) CarbBuilder: an adjustable tool for building 3D molecular structures of carbohydrates for molecular simulation. 05 1012 structures for a reducing hexasaccharide: the isomer barrier to development of single-method saccharide sequencing or synthesis systems.

This screen is necessary to confirm that there are no issues in the conversion process. 44 D. Shinmachi et al. Fig. 3 The user interface for drawing a glycan structure using GlycanBuilder. 2 Text Input In GlyTouCan, a user can register glycan structures specified in a text format (Fig. 5). Click the “Registration” pull-down menu in the menu bar at the top of the page and then the “Text Input” menu button. The “Text Input” page has a text box that can take structures in GlycoCT format (other formats are planned to be supported in the future).

24) will be described next. There are two ways to draw this structure in GlycanBuilder. 0: The First International Glycan Structure Repository 61 Fig. 22 Structure menu in GlycanBuilder. The structure menu includes templates of glycan structures and residues Fig. 23 Linkage window in GlycanBuilder.

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A Practical Guide to Using Glycomics Databases by Kiyoko F. Aoki-Kinoshita

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